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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ChIP-seq
Assay category
150
DNA binding
Target of assay
100
control
40
transcription factor
10
histone
10
histone modification
9
narrow histone mark
6
RNA binding protein
2
chromatin remodeller
1
broad histone mark
1
recombinant protein
Date released
97
November, 2017
31
May, 2020
13
December, 2017
7
August, 2017
1
August, 2021
1
November, 2018
Available data
150
bam
122
fastq
94
bigWig
74
bed narrowPeak
55
tagAlign
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
13
tsv
3
tar
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
1
hdf5
1
vcf
Organism
150
Homo sapiens
Biosample type
98
cell line
50
tissue
1
in vitro differentiated cells
1
primary cell
Organ
150
liver
68
pancreas
33
epithelium
29
vasculature
28
blood vessel
28
brain
28
connective tissue
20
heart
19
adipose tissue
18
limb
14
kidney
11
nerve
9
artery
8
spleen
8
vein
7
embryo
6
blood
6
bodily fluid
4
musculature of body
1
eye
0
urinary bladder
Project
150
AMP
Genome assembly (visualization)
585
hg19
GRCh38
Lab
150
AMP-T2D consortium
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
BIOSAMPLE
ASSAY
150 results
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Clear Filters
ChIP-seq
cell line
HepG2
98
tissue
liver
47
right lobe of liver
3
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
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