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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 354ChIP-seq
  • 64ATAC-seq
  • 6total RNA-seq
  • 5FAIRE-seq
  • 2DNase-seq
  • 1WGBS
  • 1pCHi-C
Assay category
  • 354DNA binding
  • 71DNA accessibility
  • 6Transcription
  • 1DNA methylation
Target of assay
  • 294control
  • 42transcription factor
  • 18histone
  • 18histone modification
  • 12narrow histone mark
  • 8RNA binding protein
  • 6broad histone mark
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 112November, 2017
  • 76May, 2020
  • 46October, 2019
  • 33August, 2017
  • 29October, 2018
  • 24May, 2019
  • 24May, 2022
  • 17December, 2017
  • 15April, 2019
  • 8August, 2021
  • 8February, 2018
  • 8June, 2019
  • 8November, 2018
  • 4December, 2018
  • 4February, 2021
  • 4January, 2019
  • 4September, 2017
  • 3July, 2019
  • 2November, 2019
  • 2October, 2017
  • 1March, 2019
  • 1May, 2021
Available data
  • 433bam
  • 407fastq
  • 239bigWig
  • 200tsv
  • 185bed narrowPeak
  • 161txt
  • 153zippedFastqFolder
  • 152tagAlign
  • 44bigBed narrowPeak
  • 40bed broadPeak
  • 23bedpe bed3+
  • 22hic
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 18bigBed broadPeak
  • 15bed bed3+
  • 10bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 432Homo sapiens
Biosample type
  • 204tissue
  • 119cell line
  • 84primary cell
  • 26in vitro differentiated cells
Organ
  • 150liver
  • 68pancreas
  • 33epithelium
  • 29vasculature
  • 28blood vessel
  • 28brain
  • 28connective tissue
  • 20heart
  • 19adipose tissue
  • 18limb
  • 14kidney
  • 11nerve
  • 9artery
  • 8spleen
  • 8vein
  • 7embryo
  • 6blood
  • 6bodily fluid
  • 4musculature of body
  • 1eye
Project
  • 433AMP
Genome assembly (visualization)
  • 2998hg19
  • GRCh38
Lab
  • 408AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 16inconsistent ontology term
Audit category:
  • 9missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 2inconsistent control run_type
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

433 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
FAIRE-seq
DNase-seq
WGBS
pCHi-C
tissue
liver47
islet of Langerhans51961
tibial nerve11
subcutaneous adipose tissue10
body of pancreas9
cell line
HepG298
Panc17
GM128786
EndoC_BH12
smooth muscle cell of the coronary artery2
primary cell
endothelial cell of umbilical vein71
pancreatic alpha cell6
pancreatic beta cell6
skeletal muscle myoblast22
B cell2
in vitro differentiated cells
neural progenitor cell7
adipocyte5
pancreatic endoderm5
Hepatic endoderm2
definitive endodermal cell1
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