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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
22
snATAC-seq
3
Hi-C
2
total RNA-seq
1
pCHi-C
Assay category
61
DNA accessibility
54
Transcription
41
DNA methylation
3
3D chromatin structure
Date released
135
May, 2022
19
September, 2020
3
July, 2019
2
May, 2021
1
February, 2021
Available data
405
bam
381
fastq
231
bigWig
196
tsv
181
bed narrowPeak
161
txt
153
zippedFastqFolder
130
tagAlign
41
bigBed narrowPeak
39
bed broadPeak
22
bedpe bed3+
22
hic
18
bed bedMethyl
18
bigBed bedMethyl
18
bigBed broadPeak
8
csv
7
bed bed3+
5
bed bed3
4
tar
3
bed bedgraph
3
cool
3
hdf5
2
ibed
1
bedpe
1
vcf
Organism
160
Homo sapiens
Biosample type
158
primary cell
1
cell line
1
tissue
Organ
82
epithelium
80
pancreas
connective tissue
3
brain
2
blood vessel
2
liver
2
vasculature
1
musculature of body
Project
153
HPAP
7
AMP
Genome assembly (visualization)
GRCh38
224
hg19
Lab
153
Klaus Kaestner, Upenn
5
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
1
audit script error
assembly!
GRCh38
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
160 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
Hi-C
total RNA-seq
pCHi-C
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
CD8-positive, alpha-beta T cell
2
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cell line
HepG2
1
tissue
skeletal muscle tissue
1
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