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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
3
Hi-C
2
Capture-C
2
total RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
5
DNA accessibility
3
3D chromatin structure
2
Transcription
Date released
4
February, 2023
3
July, 2019
2
August, 2021
2
May, 2021
1
February, 2021
1
May, 2022
Available data
202
fastq
188
tsv
161
txt
153
zippedFastqFolder
138
bigWig
111
bed narrowPeak
89
bam
57
tagAlign
26
bed broadPeak
21
bedpe bed3+
20
hic
17
bed bedMethyl
17
bigBed bedMethyl
13
bed bed3+
12
bigBed narrowPeak
10
bed bed3
7
bed bedgraph
7
csv
4
bigBed broadPeak
3
cool
3
hdf5
2
ibed
1
bedpe
1
tar
Organism
13
Homo sapiens
Biosample type
6
in vitro differentiated cells
6
primary cell
1
tissue
Organ
8
connective tissue
3
brain
2
blood vessel
2
epithelium
liver
2
vasculature
1
musculature of body
Project
13
AMP
Genome assembly (visualization)
GRCh38
229
hg19
Lab
9
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
assembly!
GRCh38
organ_slims!
bone marrow
liver
target.investigated_as!
control
BIOSAMPLE
ASSAY
13 results
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ATAC-seq
Hi-C
Capture-C
total RNA-seq
pCHi-C
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
osteoblast
1
tissue
skeletal muscle tissue
1
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