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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 4ATAC-seq
  • 4Hi-C
  • 2Capture-C
  • 2pCHi-C
  • 2total RNA-seq
  • 1snATAC-seq
Assay category
  • 5DNA accessibility
  • 43D chromatin structure
  • 2Transcription
Date released
  • 4February, 2023
  • 4July, 2019
  • 2August, 2021
  • 2February, 2021
  • 2May, 2021
  • 1May, 2022
Available data
  • 433bam
  • 407fastq
  • 239bigWig
  • 200tsv
  • 185bed narrowPeak
  • 161txt
  • 153zippedFastqFolder
  • 152tagAlign
  • 44bigBed narrowPeak
  • 40bed broadPeak
  • 23bedpe bed3+
  • 22hic
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 18bigBed broadPeak
  • 15bed bed3+
  • 10bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 15Homo sapiens
Biosample type
  • 7primary cell
  • 6in vitro differentiated cells
  • 1cell line
  • 1tissue
Organ
  • 8connective tissue
  • 3brain
  • 2blood vessel
  • 2epithelium
  • 2liver
  • 2vasculature
  • 1musculature of body
Project
  • 15AMP
Genome assembly (visualization)
  • GRCh38
  • 250hg19
Lab
  • 11AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 2inconsistent ontology term
  • 1audit script error
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

15 results

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Clear Filters
ATAC-seq
Hi-C
Capture-C
pCHi-C
total RNA-seq
snATAC-seq
primary cell
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
endothelial cell of hepatic sinusoid1
in vitro differentiated cells
adipocyte11
immature adipocyte2
osteoblast1
preadipocyte1
cell line
HepG21
tissue
skeletal muscle tissue1
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