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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
10
ATAC-seq
1
DNase-seq
Assay category
13
DNA binding
11
DNA accessibility
Target of assay
13
transcription factor
histone
4
histone modification
3
broad histone mark
2
RNA binding protein
1
narrow histone mark
Date released
12
November, 2017
10
February, 2023
2
August, 2017
Available data
415
bam
403
fastq
200
tsv
171
bigWig
161
txt
153
zippedFastqFolder
121
bed narrowPeak
68
tagAlign
43
bigBed narrowPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
15
bed bed3+
15
bed broadPeak
14
bigBed broadPeak
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
24
Homo sapiens
Biosample type
12
cell line
5
in vitro differentiated cells
5
tissue
2
primary cell
Organ
12
liver
5
connective tissue
4
bone element
4
skeleton
1
brain
Project
24
AMP
Genome assembly (visualization)
244
hg19
GRCh38
Lab
24
AMP-T2D consortium
assembly!
GRCh38
target.investigated_as!
histone
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
12
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
primary cell
skeletal muscle myoblast
1
1
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