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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
38
DNA binding
2
DNA accessibility
Target of assay
25
histone
25
histone modification
15
broad histone mark
13
transcription factor
10
narrow histone mark
2
RNA binding protein
Date released
22
August, 2017
15
November, 2017
2
October, 2019
1
March, 2019
Available data
433
bam
248
fastq
239
bigWig
194
tsv
185
bed narrowPeak
161
txt
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
20
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
19
hic
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
bedpe
1
vcf
Organism
40
Homo sapiens
Biosample type
22
tissue
14
cell line
4
primary cell
Organ
14
liver
13
musculature of body
7
pancreas
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
adipose tissue
1
brain
1
connective tissue
Project
40
AMP
Genome assembly (visualization)
298
hg19
GRCh38
Lab
39
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
2
inconsistent control read length
assembly!
GRCh38
files.file_type!
csv
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
ATAC-seq
DNase-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
cell line
HepG2
14
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
1
1
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