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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
24
DNA binding
2
DNA accessibility
Target of assay
23
histone
23
histone modification
14
broad histone mark
9
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
22
August, 2017
2
October, 2019
1
March, 2019
1
November, 2017
Available data
285
fastq
283
bam
188
tsv
161
txt
153
zippedFastqFolder
145
bigWig
111
bed narrowPeak
97
tagAlign
26
bed broadPeak
21
bedpe bed3+
20
hic
17
bed bedMethyl
17
bigBed bedMethyl
13
bed bed3+
12
bigBed narrowPeak
10
bed bed3
7
bed bedgraph
7
csv
4
bigBed broadPeak
3
cool
3
hdf5
2
ibed
1
bedpe
tar
Organism
26
Homo sapiens
Biosample type
22
tissue
4
primary cell
Organ
liver
13
musculature of body
7
pancreas
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
adipose tissue
1
brain
1
connective tissue
Project
26
AMP
Genome assembly (visualization)
235
hg19
GRCh38
Lab
25
AMP-T2D consortium
1
Mark McCarthy, Oxford
assembly!
GRCh38
files.file_type!
tar
organ_slims!
bone marrow
liver
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
ATAC-seq
DNase-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
1
1
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