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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
13
DNA binding
2
DNA accessibility
Target of assay
histone
25
histone modification
15
broad histone mark
13
transcription factor
10
narrow histone mark
2
RNA binding protein
Date released
12
November, 2017
2
August, 2017
1
March, 2019
Available data
415
bam
403
fastq
200
tsv
171
bigWig
161
txt
153
zippedFastqFolder
121
bed narrowPeak
68
tagAlign
43
bigBed narrowPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
15
bed bed3+
15
bed broadPeak
14
bigBed broadPeak
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
15
Homo sapiens
Biosample type
12
cell line
2
primary cell
1
tissue
Organ
12
liver
1
pancreas
Project
15
AMP
Genome assembly (visualization)
GRCh38
232
hg19
Lab
14
AMP-T2D consortium
1
Mark McCarthy, Oxford
assembly!
GRCh38
month_released!
November, 2020
target.investigated_as!
histone
BIOSAMPLE
ASSAY
15 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
12
primary cell
skeletal muscle myoblast
1
1
tissue
islet of Langerhans
1
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