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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
20
ATAC-seq
1
FAIRE-seq
Assay category
55
DNA binding
21
DNA accessibility
Target of assay
43
transcription factor
12
histone
12
histone modification
11
narrow histone mark
5
RNA binding protein
2
chromatin remodeller
1
broad histone mark
Date released
33
November, 2017
20
May, 2022
14
August, 2021
8
May, 2020
1
July, 2019
Available data
178
bam
128
fastq
102
bigWig
91
tagAlign
76
bed narrowPeak
33
bigBed narrowPeak
26
tsv
15
bed broadPeak
14
bigBed broadPeak
5
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
4
hdf5
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
vcf
Organism
76
Homo sapiens
Biosample type
46
cell line
30
tissue
Organ
74
liver
27
eye
26
pancreas
14
musculature of body
13
epithelium
4
connective tissue
2
adipose tissue
2
brain
1
blood vessel
1
heart
1
kidney
1
limb
1
vasculature
1
vein
Project
76
AMP
Genome assembly (visualization)
578
hg19
GRCh38
Lab
42
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
BIOSAMPLE
ASSAY
76 results
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Clear Filters
ChIP-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
46
tissue
liver
8
20
cingulate gyrus
1
frontal cortex
1
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