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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 108ChIP-seq
  • 70ATAC-seq
  • 5FAIRE-seq
  • 2DNase-seq
Assay category
  • 108DNA binding
  • 77DNA accessibility
Target of assay
  • 64histone
  • 64histone modification
  • 44transcription factor
  • 33broad histone mark
  • 31narrow histone mark
  • 6RNA binding protein
  • 2chromatin remodeller
Date released
  • 38May, 2022
  • 33November, 2017
  • 30February, 2023
  • 30May, 2021
  • 24August, 2017
  • 16August, 2021
  • 8May, 2020
  • 2July, 2019
  • 1April, 2019
  • 1May, 2019
  • 1November, 2018
  • 1October, 2019
Available data
  • 433bam
  • 407fastq
  • 239bigWig
  • 200tsv
  • 185bed narrowPeak
  • 161txt
  • 153zippedFastqFolder
  • 152tagAlign
  • 44bigBed narrowPeak
  • 40bed broadPeak
  • 23bedpe bed3+
  • 22hic
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 18bigBed broadPeak
  • 15bed bed3+
  • 10bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 185Homo sapiens
Biosample type
  • 101tissue
  • 46cell line
  • 34primary cell
  • 4in vitro differentiated cells
Organ
  • 74liver
  • 27eye
  • 26pancreas
  • 14musculature of body
  • 13epithelium
  • 4connective tissue
  • 2adipose tissue
  • 2brain
  • 1blood vessel
  • 1heart
  • 1kidney
  • 1limb
  • 1vasculature
  • 1vein
Project
  • 185AMP
Genome assembly (visualization)
  • GRCh38
  • 1598hg19
Lab
  • 99AMP-T2D consortium
  • 48Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 7missing controlled_by
Audit category:
  • 2inconsistent control read length
  • 2inconsistent control run_type
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

185 results

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Clear Filters
ChIP-seq
ATAC-seq
FAIRE-seq
DNase-seq
tissue
liver820
islet of Langerhans6181
retina15
skeletal muscle tissue13
pigmented layer of retina12
cell line
HepG246
primary cell
CD8-positive, alpha-beta T cell30
skeletal muscle myoblast12
endothelial cell of umbilical vein1
in vitro differentiated cells
adipocyte1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
osteoblast1
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