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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
28
ChIP-seq
19
ATAC-seq
7
Hi-C
6
WGBS
2
FAIRE-seq
Assay category
59
Transcription
28
DNA binding
21
DNA accessibility
7
3D chromatin structure
6
DNA methylation
Target of assay
28
control
Date released
37
February, 2023
24
May, 2022
16
August, 2017
16
September, 2020
9
October, 2018
6
February, 2021
4
September, 2017
3
October, 2022
2
November, 2019
1
August, 2021
1
March, 2019
1
March, 2020
1
November, 2018
Available data
114
fastq
80
zippedFastqFolder
68
bam
26
bed narrowPeak
12
bigWig
11
tagAlign
11
tsv
7
bed broadPeak
7
bedpe bed3+
7
hic
6
txt
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
120
Homo sapiens
Biosample type
74
primary cell
46
tissue
1
cell line
Organ
124
liver
121
pancreas
81
epithelium
26
connective tissue
21
adipose tissue
8
embryo
8
spleen
6
blood
6
bodily fluid
6
brain
4
musculature of body
4
vasculature
3
blood vessel
3
heart
1
vein
Project
62
HPAP
59
AMP
Genome assembly (visualization)
369
hg19
GRCh38
Lab
62
Klaus Kaestner, Upenn
33
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
Audit category:
3
audit script error
1
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
121 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
WGBS
FAIRE-seq
primary cell
pancreatic alpha cell
42
6
1
6
pancreatic beta cell
11
6
1
pancreatic acinar cell
1
tissue
islet of Langerhans
6
5
19
2
1
body of pancreas
8
pancreas
3
1
1
cell line
EndoC_BH1
1
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