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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
17
ChIP-seq
1
DNase-seq
Assay category
19
DNA methylation
17
DNA binding
1
DNA accessibility
Target of assay
13
transcription factor
4
histone
4
histone modification
3
broad histone mark
2
RNA binding protein
1
narrow histone mark
Date released
15
July, 2019
14
November, 2017
6
August, 2017
2
October, 2019
Available data
429
bam
403
fastq
239
bigWig
200
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
37
Homo sapiens
Biosample type
14
cell line
14
primary cell
9
tissue
Organ
16
liver
8
epithelium
4
kidney
3
musculature of body
3
vasculature
2
blood vessel
2
brain
2
heart
2
pancreas
2
vein
1
connective tissue
1
eye
1
pericardium
Project
37
AMP
Genome assembly (visualization)
GRCh38
281
hg19
Lab
37
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
2
inconsistent control read length
assembly!
GRCh38
month_released!
January, 2019
May, 2023
BIOSAMPLE
ASSAY
37 results
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RRBS
ChIP-seq
DNase-seq
cell line
HepG2
14
primary cell
skeletal muscle myoblast
1
1
1
endothelial cell of umbilical vein
2
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 6 more…
tissue
skeletal muscle tissue
2
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 3 more…
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