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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
1
whole genome sequencing assay
Assay category
19
DNA methylation
1
DNA sequencing
Date released
15
July, 2019
4
August, 2017
1
August, 2021
Available data
407
fastq
387
bam
229
bigWig
184
bed narrowPeak
168
tsv
161
txt
153
zippedFastqFolder
143
tagAlign
40
bigBed narrowPeak
38
bed broadPeak
19
bed bedMethyl
19
bigBed bedMethyl
16
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
bedpe bed3+
8
csv
8
hic
7
bed bedgraph
4
hdf5
3
cool
3
tar
1
bedpe
1
vcf
Organism
20
Homo sapiens
Biosample type
10
primary cell
9
tissue
1
cell line
Organ
6
epithelium
4
kidney
3
liver
3
musculature of body
2
brain
2
heart
2
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
20
AMP
Genome assembly (visualization)
19
hg19
GRCh38
Lab
19
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
assembly!
GRCh38
month_released!
March, 2020
October, 2019
BIOSAMPLE
ASSAY
20 results
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RRBS
whole genome sequencing assay
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
tissue
skeletal muscle tissue
2
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 3 more…
cell line
HepG2
1
See all biosamples
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