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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
1
DNase-seq
1
FAIRE-seq
Assay category
20
DNA binding
2
DNA accessibility
Target of assay
16
transcription factor
4
histone
4
histone modification
3
RNA binding protein
3
broad histone mark
1
narrow histone mark
Date released
17
November, 2017
3
October, 2019
2
August, 2017
Available data
433
bam
407
fastq
239
bigWig
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
22
Homo sapiens
Biosample type
17
cell line
5
primary cell
Organ
17
liver
3
blood vessel
3
epithelium
3
vasculature
3
vein
Project
22
AMP
Genome assembly (visualization)
GRCh38
266
hg19
Lab
22
AMP-T2D consortium
Audit category:
2
inconsistent control read length
assembly!
GRCh38
files.file_type!
tsv
xls
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
DNase-seq
FAIRE-seq
cell line
HepG2
17
primary cell
endothelial cell of umbilical vein
2
1
skeletal muscle myoblast
1
1
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