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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
FAIRE-seq
3
ATAC-seq
2
ChIP-seq
2
DNase-seq
Assay category
10
DNA accessibility
2
DNA binding
Target of assay
1
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
1
transcription factor
Date released
November, 2017
4
August, 2017
4
October, 2019
2
July, 2019
1
May, 2019
1
November, 2018
Available data
321
bam
305
fastq
199
tsv
184
bigWig
161
txt
153
zippedFastqFolder
152
bed narrowPeak
128
tagAlign
25
bed broadPeak
22
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
15
bed bed3+
12
bigBed narrowPeak
10
bed bed3
8
csv
7
bed bedgraph
4
bigBed broadPeak
4
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
12
Homo sapiens
Biosample type
6
tissue
4
primary cell
2
in vitro differentiated cells
Organ
3
connective tissue
2
pancreas
1
adipose tissue
1
blood vessel
1
brain
1
epithelium
1
kidney
1
limb
1
musculature of body
1
vasculature
1
vein
Project
12
AMP
Genome assembly (visualization)
GRCh38
705
hg19
Lab
12
AMP-T2D consortium
assembly!
GRCh38
month_released!
August, 2018
November, 2017
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
12 results
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FAIRE-seq
ATAC-seq
ChIP-seq
DNase-seq
tissue
adipose tissue
1
frontal cortex
1
islet of Langerhans
1
kidney
1
muscle of leg
1
+ See 1 more…
primary cell
skeletal muscle myoblast
1
2
endothelial cell of umbilical vein
1
in vitro differentiated cells
adipocyte
2
See all biosamples
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