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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 34ChIP-seq
  • 5FAIRE-seq
  • 3ATAC-seq
  • 2DNase-seq
Assay category
  • 34DNA binding
  • 10DNA accessibility
Target of assay
  • 33transcription factor
  • 5RNA binding protein
  • 2chromatin remodeller
  • 1histone
  • 1histone modification
  • 1narrow histone mark
Date released
  • 32November, 2017
  • 4August, 2017
  • 4October, 2019
  • 2July, 2019
  • 1May, 2019
  • 1November, 2018
Available data
  • 433bam
  • 407fastq
  • 239bigWig
  • 200tsv
  • 185bed narrowPeak
  • 161txt
  • 153zippedFastqFolder
  • 152tagAlign
  • 44bigBed narrowPeak
  • 40bed broadPeak
  • 23bedpe bed3+
  • 22hic
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 18bigBed broadPeak
  • 15bed bed3+
  • 10bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 44Homo sapiens
Biosample type
  • 32cell line
  • 6tissue
  • 4primary cell
  • 2in vitro differentiated cells
Organ
  • 32liver
  • 3connective tissue
  • 2pancreas
  • 1adipose tissue
  • 1blood vessel
  • 1brain
  • 1epithelium
  • 1kidney
  • 1limb
  • 1musculature of body
  • 1vasculature
  • 1vein
Project
  • 44AMP
Genome assembly (visualization)
  • GRCh38
  • 963hg19
Lab
  • 44AMP-T2D consortium
Audit category:
  • 7missing controlled_by
Audit category:
  • 2inconsistent control read length
  • 2inconsistent control run_type
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

44 results

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Clear Filters
ChIP-seq
FAIRE-seq
ATAC-seq
DNase-seq
cell line
HepG232
tissue
adipose tissue1
frontal cortex1
islet of Langerhans1
kidney1
muscle of leg1
primary cell
skeletal muscle myoblast12
endothelial cell of umbilical vein1
in vitro differentiated cells
adipocyte2
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