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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 136ChIP-seq
  • 85ATAC-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Hi-C
  • 2DNase-seq
  • 2total RNA-seq
Assay category
  • 136DNA binding
  • 92DNA accessibility
  • 43D chromatin structure
  • 2Transcription
Target of assay
  • 68histone
  • 68histone modification
  • 48transcription factor
  • 36broad histone mark
  • 32narrow histone mark
  • 20control
  • 6RNA binding protein
  • 2chromatin remodeller
Date released
  • 55November, 2017
  • 53May, 2020
  • 40May, 2021
  • 25August, 2017
  • 20May, 2022
  • 16August, 2021
  • 8January, 2018
  • 6July, 2019
  • 6October, 2019
  • 4March, 2020
  • 3February, 2023
  • 1April, 2019
  • 1May, 2019
  • 1November, 2018
Available data
  • 433bam
  • 407fastq
  • 239bigWig
  • 200tsv
  • 185bed narrowPeak
  • 161txt
  • 153zippedFastqFolder
  • 152tagAlign
  • 44bigBed narrowPeak
  • 40bed broadPeak
  • 23bedpe bed3+
  • 22hic
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 18bigBed broadPeak
  • 15bed bed3+
  • 10bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 239Homo sapiens
Biosample type
  • 94primary cell
  • 68cell line
  • 60tissue
  • 16in vitro differentiated cells
  • 1stem cell
Organ
  • 94liver
  • 15musculature of body
  • 12pancreas
  • 9epithelium
  • 8brain
  • 8connective tissue
  • 7vasculature
  • 6blood vessel
  • 3adipose tissue
  • 3vein
  • 1blood
  • 1bodily fluid
  • 1embryo
  • 1heart
  • 1kidney
  • 1limb
Project
  • 239AMP
Genome assembly (visualization)
  • 3016hg19
  • GRCh38
  • 5hg18
Lab
  • 160AMP-T2D consortium
  • 40Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 5Struan F.A. Grant, CHOP
Audit category:
  • 7inconsistent ontology term
Audit category:
  • 7missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 2inconsistent control run_type
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

239 results

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Clear Filters
ChIP-seq
ATAC-seq
FAIRE-seq
GRO-seq
Hi-C
DNase-seq
total RNA-seq
primary cell
CD8-positive, alpha-beta T cell3322
skeletal muscle myoblast22
endothelial cell of umbilical vein21
B cell2
T follicular helper cell2
cell line
HepG265
EndoC_BH12
GM128781
tissue
liver820
skeletal muscle tissue131
islet of Langerhans621
adipose tissue2
cingulate gyrus1
in vitro differentiated cells
embryonic stem cell6
adipocyte3
Posterior foregut1
Progenitor cell of Hypothalamus (neural progenitor cell)1
definitive endodermal cell1
stem cell
hESC1
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