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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
2
pCHi-C
Assay category
60
DNA accessibility
60
Transcription
41
DNA methylation
Date released
134
May, 2022
19
September, 2020
6
February, 2021
2
March, 2020
1
November, 2018
1
September, 2018
Available data
433
bam
407
fastq
239
bigWig
200
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
0
tagAlign bed3+
Organism
163
Homo sapiens
Biosample type
155
primary cell
6
tissue
2
in vitro differentiated cells
Organ
80
epithelium
80
pancreas
5
kidney
1
liver
Project
153
HPAP
10
AMP
Genome assembly (visualization)
3
hg19
GRCh38
Lab
153
Klaus Kaestner, Upenn
10
AMP-T2D consortium
Audit category:
5
audit script error
2
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
163 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
pCHi-C
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
pancreatic cell
2
tissue
kidney
5
liver
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
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