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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
total RNA-seq
17
ChIP-seq
6
WGBS
Assay category
53
Transcription
17
DNA binding
6
DNA methylation
Target of assay
17
control
Date released
37
February, 2023
16
September, 2020
12
August, 2017
6
February, 2021
3
December, 2017
2
November, 2017
Available data
76
fastq
33
bam
13
bed narrowPeak
10
tsv
9
bigWig
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hdf5
2
tagAlign
1
bigBed narrowPeak
1
tar
Organism
76
Homo sapiens
Biosample type
73
primary cell
3
in vitro differentiated cells
Organ
122
liver
90
pancreas
76
epithelium
26
connective tissue
21
adipose tissue
8
embryo
8
spleen
6
blood
6
bodily fluid
6
brain
2
musculature of body
2
vasculature
1
blood vessel
Project
59
HPAP
17
AMP
Genome assembly (visualization)
GRCh38
173
hg19
Lab
59
Klaus Kaestner, Upenn
17
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assembly!
GRCh38
month_released!
May, 2022
BIOSAMPLE
ASSAY
76 results
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total RNA-seq
ChIP-seq
WGBS
primary cell
pancreatic alpha cell
42
6
6
pancreatic beta cell
11
6
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
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