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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 205ChIP-seq
  • 98total RNA-seq
  • 36single cell RNA-seq
  • 27snATAC-seq
  • 19ATAC-seq
  • 8WGBS
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1DNase-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 205DNA binding
  • 134Transcription
  • 49DNA accessibility
  • 12DNA methylation
  • 13D chromatin structure
Target of assay
  • 159control
  • 42transcription factor
  • 7RNA binding protein
  • 4histone
  • 4histone modification
  • 2broad histone mark
  • 2chromatin remodeller
  • 2narrow histone mark
  • 1recombinant protein
Date released
  • 101November, 2017
  • 76February, 2023
  • 45February, 2021
  • 38August, 2017
  • 38September, 2020
  • 27October, 2018
  • 24May, 2022
  • 17December, 2017
  • 9November, 2018
  • 8February, 2018
  • 5December, 2018
  • 5January, 2018
  • 4January, 2019
  • 4September, 2017
  • 3October, 2017
  • 1August, 2018
  • 1March, 2019
  • 1September, 2018
Available data
  • 433bam
  • 407fastq
  • 239bigWig
  • 200tsv
  • 185bed narrowPeak
  • 161txt
  • 153zippedFastqFolder
  • 152tagAlign
  • 44bigBed narrowPeak
  • 40bed broadPeak
  • 23bedpe bed3+
  • 22hic
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 18bigBed broadPeak
  • 15bed bed3+
  • 10bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 406Homo sapiens
Biosample type
  • 180primary cell
  • 106cell line
  • 97tissue
  • 23in vitro differentiated cells
  • 1stem cell
Organ
  • 122liver
  • 114pancreas
  • 76epithelium
  • 26connective tissue
  • 21adipose tissue
  • 8embryo
  • 8spleen
  • 6blood
  • 6bodily fluid
  • 6brain
  • 2musculature of body
  • 2vasculature
  • 1blood vessel
Project
  • 248AMP
  • 159HPAP
Genome assembly (visualization)
  • 1008hg19
  • GRCh38
  • 5hg18
Lab
  • 223AMP-T2D consortium
  • 159Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 27audit script error
  • 2inconsistent ontology term
Audit category:
  • 10missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 2inconsistent control run_type
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

407 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
DNase-seq
Hi-C
pCHi-C
primary cell
Langerhans cell3427
pancreatic alpha cell6426
exocrine cell39
pancreatic beta cell611
skeletal muscle myoblast211
cell line
HepG2991
GM128786
tissue
islet of Langerhans56191
liver1611
subcutaneous adipose tissue10
body of pancreas8
omental fat pad8
in vitro differentiated cells
pancreatic endoderm51
adipocyte5
Hepatic endoderm2
definitive endodermal cell11
primitive gut cell11
stem cell
hESC1
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