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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
Hi-C
Assay category
3
3D chromatin structure
Date released
1
August, 2021
1
March, 2019
1
October, 2019
Available data
433
bam
407
fastq
239
bigWig
200
tsv
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
3
Homo sapiens
Biosample type
2
tissue
1
primary cell
Organ
1
blood vessel
1
epithelium
1
kidney
1
pancreas
1
vasculature
1
vein
Project
3
AMP
Genome assembly (visualization)
3
hg19
GRCh38
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
assembly!
GRCh38
files.file_type!
bed narrowPeak
bedpe bed3+
BIOSAMPLE
ASSAY
3 results
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Hi-C
tissue
islet of Langerhans
1
kidney
1
primary cell
endothelial cell of umbilical vein
1
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