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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
Hi-C
Assay category
12
3D chromatin structure
Date released
7
March, 2020
3
October, 2019
2
August, 2021
Available data
334
bam
289
fastq
218
bigWig
179
tsv
156
bed narrowPeak
155
txt
139
tagAlign
73
zippedFastqFolder
39
bigBed narrowPeak
31
bed broadPeak
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
14
bedpe bed3+
13
bed bed3+
12
hic
10
bed bed3
8
csv
7
bed bedgraph
3
tar
2
hdf5
2
ibed
1
vcf
Organism
12
Homo sapiens
Biosample type
7
tissue
4
in vitro differentiated cells
1
cell line
Organ
pancreas
6
epithelium
3
blood vessel
3
heart
vasculature
2
liver
2
musculature of body
2
vein
1
kidney
Project
12
AMP
Genome assembly (visualization)
12
hg19
GRCh38
Lab
10
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
assembly!
GRCh38
organ_slims!
pancreas
vasculature
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
12 results
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Hi-C
tissue
psoas muscle
2
heart
1
heart left ventricle
1
heart right ventricle
1
kidney
1
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
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