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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 22Hi-C
Assay category
  • 223D chromatin structure
Date released
  • 10March, 2020
  • 4October, 2019
  • 3October, 2022
  • 2August, 2021
  • 2November, 2019
  • 1March, 2019
Available data
  • 433bam
  • 407fastq
  • 239bigWig
  • 200tsv
  • 185bed narrowPeak
  • 161txt
  • 153zippedFastqFolder
  • 152tagAlign
  • 44bigBed narrowPeak
  • 40bed broadPeak
  • 23bedpe bed3+
  • 22hic
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 18bigBed broadPeak
  • 15bed bed3+
  • 10bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 22Homo sapiens
Biosample type
  • 11tissue
  • 5primary cell
  • 4in vitro differentiated cells
  • 2cell line
Organ
  • 7pancreas
  • 6epithelium
  • 3blood vessel
  • 3heart
  • 3vasculature
  • 2liver
  • 2musculature of body
  • 2vein
  • 1kidney
Project
  • 19AMP
  • 3HPAP
Genome assembly (visualization)
  • 22hg19
  • GRCh38
Lab
  • 16AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 2Bing Ren, UCSD
  • 1Katalin Susztak, Upenn
Audit category:
  • 5inconsistent ontology term
  • 4audit script error
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

22 results

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Clear Filters
Hi-C
tissue
islet of Langerhans2
psoas muscle2
aorta1
heart1
heart left ventricle1
primary cell
endothelial cell of umbilical vein2
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
cell line
EndoC_BH11
HepG21
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