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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
Assay category
84
DNA binding
Target of assay
57
control
27
histone
27
histone modification
17
narrow histone mark
10
broad histone mark
Date released
August, 2017
31
May, 2020
24
November, 2017
9
October, 2019
8
August, 2021
8
October, 2017
3
February, 2021
1
May, 2021
Available data
400
bam
369
fastq
214
bigWig
196
tsv
161
bed narrowPeak
161
txt
153
zippedFastqFolder
84
tagAlign
40
bigBed narrowPeak
23
bedpe bed3+
22
hic
18
bed broadPeak
16
bigBed broadPeak
15
bed bed3+
15
bed bedMethyl
15
bigBed bedMethyl
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
84
Homo sapiens
Biosample type
69
tissue
8
in vitro differentiated cells
6
cell line
1
primary cell
Organ
36
brain
35
liver
2
artery
2
blood vessel
2
epithelium
2
heart
2
vasculature
1
pancreas
Project
84
AMP
Genome assembly (visualization)
GRCh38
200
hg19
Lab
84
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assembly!
GRCh38
month_released!
August, 2017
December, 2019
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
tissue
liver
31
brain
8
cingulate gyrus
8
layer of hippocampus
4
substantia nigra
4
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
7
pancreatic PP cell
1
cell line
HepG2
3
smooth muscle cell of the coronary artery
2
iPSC derived cell line
1
primary cell
hepatocyte
1
See all biosamples
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