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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
single cell RNA-seq
4
pCHi-C
3
snDrop-seq
2
RNA microarray
2
total RNA-seq
Assay category
7
Transcription
Date released
8
February, 2021
4
March, 2020
2
December, 2019
2
February, 2020
Available data
62
txt
42
bam
26
fastq
22
tagAlign
16
tsv
9
bigWig
8
bed bed3+
5
bed bed3
5
bed bedMethyl
5
bed narrowPeak
5
bigBed bedMethyl
5
csv
4
bed bedgraph
4
bigBed narrowPeak
1
bed broadPeak
1
bedpe bed3+
1
hdf5
1
hic
Organism
16
Homo sapiens
Biosample type
13
tissue
2
cell line
1
stem cell
Organ
98
heart
14
brain
12
kidney
12
liver
11
pancreas
10
blood vessel
10
epithelium
10
vasculature
5
eye
4
artery
4
connective tissue
3
adipose tissue
3
limb
3
musculature of body
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
16
AMP
Genome assembly (visualization)
GRCh38
486
hg19
Lab
16
AMP-T2D consortium
Audit category:
7
audit script error
3
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
16 results
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single cell RNA-seq
pCHi-C
snDrop-seq
RNA microarray
total RNA-seq
tissue
kidney
5
adipose tissue
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 4 more…
cell line
RCC 7860 VHL
1
RCC 7860 vector
1
stem cell
mesenchymal stem cell
1
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