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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
10
total RNA-seq
5
single cell RNA-seq
3
ATAC-seq
1
MPRA
Assay category
15
Transcription
3
DNA accessibility
Date released
89
February, 2021
August, 2021
7
February, 2023
6
May, 2022
1
October, 2022
Available data
406
fastq
397
bam
217
bigWig
168
bed narrowPeak
153
zippedFastqFolder
142
tagAlign
104
txt
88
tsv
43
bigBed narrowPeak
38
bed broadPeak
19
bed bedMethyl
19
bedpe bed3+
19
bigBed bedMethyl
17
hic
16
bigBed broadPeak
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
3
cool
3
tar
2
hdf5
2
ibed
1
bedpe
Organism
102
Homo sapiens
Biosample type
99
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
6
pancreas
5
kidney
4
skeleton
Project
103
AMP
Genome assembly (visualization)
3
hg19
Lab
94
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
5
audit script error
assembly!
GRCh38
files.file_type!
bed bed3+
month_released!
August, 2021
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
103 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
tissue
bone element
84
islet of Langerhans
6
kidney
5
acetabular part of hip bone
1
ilium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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