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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
1
snATAC-seq
Assay category
72
Transcription
1
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
May, 2022
4
February, 2023
October, 2022
Available data
432
bam
407
fastq
200
tsv
199
bigWig
160
txt
155
bed narrowPeak
153
zippedFastqFolder
151
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
20
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
19
hic
18
bigBed broadPeak
13
bed bed3+
10
bed bed3
8
csv
bed bedgraph
4
hdf5
4
tar
2
ibed
1
bedpe
1
vcf
Organism
157
Homo sapiens
Biosample type
157
tissue
Organ
88
bone element
62
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
157
AMP
Genome assembly (visualization)
1
hg19
Lab
94
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
assembly!
GRCh38
files.file_type!
bed bedgraph
month_released!
May, 2021
October, 2022
BIOSAMPLE
ASSAY
157 results
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RNA microarray
total RNA-seq
single cell RNA-seq
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
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