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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
10
total RNA-seq
5
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
15
Transcription
4
DNA accessibility
Date released
89
February, 2021
7
February, 2023
7
May, 2022
1
October, 2022
Available data
418
bam
392
fastq
232
bigWig
200
tsv
179
bed narrowPeak
153
zippedFastqFolder
152
tagAlign
104
txt
39
bigBed narrowPeak
38
bed broadPeak
23
bedpe bed3+
21
hic
19
bed bedMethyl
19
bigBed bedMethyl
16
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
103
Homo sapiens
Biosample type
100
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
6
pancreas
5
kidney
4
skeleton
1
musculature of body
Project
104
AMP
Genome assembly (visualization)
4
hg19
Lab
95
AMP-T2D consortium
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
assembly!
GRCh38
lab.title!
Katalin Susztak, Upenn
organ_slims!
embryo
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
104 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
islet of Langerhans
6
kidney
5
acetabular part of hip bone
1
ilium
1
+ See 3 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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