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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 40ChIP-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 40DNA binding
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • 29control
  • 9transcription factor
  • 2histone
  • 2histone modification
  • 1broad histone mark
  • 1narrow histone mark
Date released
  • 18August, 2017
  • 16November, 2017
  • 8February, 2018
  • 1December, 2017
  • 1January, 2019
  • 1October, 2017
Available data
  • 45fastq
  • 40bam
  • 16bigWig
  • 10bed broadPeak
  • 10bigBed broadPeak
  • 9bed narrowPeak
  • 9bigBed narrowPeak
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3tagAlign
Organism
  • 45Homo sapiens
Biosample type
  • 17cell line
  • 15primary cell
  • 8in vitro differentiated cells
  • 5tissue
Organ
  • 18liver
  • 12epithelium
  • 12pancreas
  • 3embryo
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 45AMP
Genome assembly (visualization)
  • 117hg19
  • GRCh38
Lab
  • 45AMP-T2D consortium
Audit category:
  • 3inconsistent control read length
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

45 results

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Clear Filters
ChIP-seq
RRBS
DNase-seq
cell line
HepG216
GM128781
primary cell
pancreatic alpha cell6
pancreatic beta cell6
skeletal muscle myoblast111
in vitro differentiated cells
pancreatic endoderm3
definitive endodermal cell1
embryonic stem cell1
endocrine cell1
posterior foregut1
tissue
liver11
skeletal muscle tissue2
brain1
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