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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 19ChIP-seq
  • 5GRO-seq
  • 3single cell RNA-seq
  • 2WGBS
  • 1ATAC-seq
Assay category
  • 19DNA binding
  • 3Transcription
  • 2DNA methylation
  • 1DNA accessibility
Target of assay
  • 15control
  • 3transcription factor
  • 2RNA binding protein
  • 2chromatin remodeller
  • 1histone
  • 1histone modification
  • 1narrow histone mark
Date released
  • 6December, 2017
  • 6November, 2017
  • 5January, 2018
  • 4October, 2018
  • 3August, 2017
  • 2November, 2018
  • 1January, 2019
  • 1March, 2019
  • 1September, 2018
  • 1September, 2020
Available data
  • 29fastq
  • 20bam
  • 7bigWig
  • 2bed narrowPeak
  • 2bigBed narrowPeak
  • 2csv
  • 1bed broadPeak
  • 1zippedFastqFolder
Organism
  • 30Homo sapiens
Biosample type
  • 10tissue
  • 9in vitro differentiated cells
  • 7cell line
  • 3primary cell
  • 1stem cell
Organ
  • 9liver
  • 5embryo
  • 5pancreas
  • 3epithelium
  • 2adipose tissue
  • 2connective tissue
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 29AMP
  • 1HPAP
Genome assembly (visualization)
  • GRCh38
  • 154hg19
  • 5hg18
Lab
  • 28AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 3missing controlled_by
Audit category:
  • 2inconsistent control run_type
  • 1inconsistent control read length
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

30 results

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Clear Filters
ChIP-seq
GRO-seq
single cell RNA-seq
WGBS
ATAC-seq
tissue
body of pancreas3
islet of Langerhans11
adipose tissue1
liver1
omental fat pad1
in vitro differentiated cells
pancreatic endoderm21
Hepatic endoderm2
Posterior foregut1
definitive endodermal cell1
hepatocyte1
cell line
HepG26
GM128781
primary cell
pancreatic cell2
Langerhans cell1
stem cell
hESC1
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