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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 69ChIP-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 69DNA binding
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • 47control
  • 18transcription factor
  • 4histone
  • 4histone modification
  • 3RNA binding protein
  • 2broad histone mark
  • 2chromatin remodeller
  • 2narrow histone mark
Date released
  • 32November, 2017
  • 23August, 2017
  • 8February, 2018
  • 4September, 2017
  • 3December, 2017
  • 3October, 2017
  • 1January, 2019
Available data
  • 74fastq
  • 68bam
  • 32bigWig
  • 18bed narrowPeak
  • 18bigBed narrowPeak
  • 12bed broadPeak
  • 12bigBed broadPeak
  • 7tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 73Homo sapiens
Biosample type
  • 30cell line
  • 19primary cell
  • 15tissue
  • 10in vitro differentiated cells
Organ
  • 32liver
  • 18pancreas
  • 15epithelium
  • 6brain
  • 5embryo
  • 2musculature of body
  • 2vasculature
  • 1adipose tissue
  • 1blood
  • 1blood vessel
  • 1bodily fluid
  • 1connective tissue
Project
  • 74AMP
Genome assembly (visualization)
  • 226hg19
  • GRCh38
Lab
  • 74AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 5missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 2inconsistent control run_type
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

74 results

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Clear Filters
ChIP-seq
RRBS
DNase-seq
cell line
HepG229
GM128781
primary cell
pancreatic alpha cell6
pancreatic beta cell6
skeletal muscle myoblast211
astrocyte of the cerebellum1
brain microvascular endothelial cell1
tissue
islet of Langerhans4
brain3
liver21
pancreas2
skeletal muscle tissue2
in vitro differentiated cells
pancreatic endoderm4
Hepatic endoderm1
definitive endodermal cell1
embryonic stem cell1
endocrine cell1
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