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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
40
ATAC-seq
16
snATAC-seq
5
GRO-seq
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
57
DNA accessibility
43
DNA binding
1
3D chromatin structure
1
Transcription
Target of assay
38
control
5
transcription factor
Date released
39
May, 2022
27
November, 2017
16
February, 2021
10
December, 2017
5
January, 2018
3
August, 2017
3
January, 2019
1
December, 2018
1
March, 2019
1
November, 2018
1
September, 2020
Available data
67
fastq
45
bam
40
zippedFastqFolder
11
bigWig
5
bed broadPeak
4
bigBed broadPeak
1
bed narrowPeak
1
bigBed narrowPeak
Organism
107
Homo sapiens
Biosample type
56
primary cell
31
cell line
13
tissue
6
in vitro differentiated cells
1
stem cell
Organ
42
pancreas
40
epithelium
38
liver
3
blood
3
bodily fluid
3
embryo
Project
56
HPAP
51
AMP
Genome assembly (visualization)
104
hg19
GRCh38
5
hg18
Lab
56
Klaus Kaestner, Upenn
50
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
16
audit script error
1
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
ATAC-seq
snATAC-seq
GRO-seq
FAIRE-seq
Hi-C
single cell RNA-seq
primary cell
pancreatic alpha cell
22
Langerhans cell
16
1
pancreatic beta cell
13
pancreatic acinar cell
4
cell line
HepG2
27
1
GM12878
3
tissue
liver
10
islet of Langerhans
1
1
pancreas
1
in vitro differentiated cells
pancreatic endoderm
1
1
Hepatic endoderm
1
Posterior foregut
1
definitive endodermal cell
1
primitive gut cell
1
stem cell
hESC
1
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