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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 69single cell RNA-seq
  • 58ATAC-seq
  • 48snATAC-seq
  • 47WGBS
  • 43ChIP-seq
  • 6total RNA-seq
  • 1DNase-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 107DNA accessibility
  • 75Transcription
  • 47DNA methylation
  • 43DNA binding
  • 13D chromatin structure
Target of assay
  • 41control
  • 2chromatin remodeller
  • 2transcription factor
  • 1RNA binding protein
Date released
  • 158May, 2022
  • 45February, 2021
  • 22October, 2018
  • 22September, 2020
  • 6November, 2017
  • 6November, 2018
  • 5August, 2017
  • 5December, 2018
  • 2December, 2017
  • 1August, 2018
  • 1March, 2019
  • 1September, 2018
Available data
  • 140fastq
  • 135zippedFastqFolder
  • 69bam
  • 21bed narrowPeak
  • 6tsv
  • 6txt
  • 3bigBed narrowPeak
  • 3bigWig
  • 2bed broadPeak
  • 2csv
  • 1bedpe bed3+
  • 1bigBed broadPeak
Organism
  • 274Homo sapiens
Biosample type
  • 204primary cell
  • 60tissue
  • 9cell line
  • 1in vitro differentiated cells
Organ
  • 116pancreas
  • 86epithelium
  • 18adipose tissue
  • 18connective tissue
  • 13liver
  • 7spleen
  • 2blood
  • 2bodily fluid
Project
  • 201HPAP
  • 73AMP
Genome assembly (visualization)
  • 321hg19
  • GRCh38
Lab
  • 201Klaus Kaestner, Upenn
  • 48AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 27audit script error
Audit category:
  • 2missing controlled_by
Audit category:
  • 2inconsistent control run_type
  • 1inconsistent control read length
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

274 results

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Clear Filters
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
total RNA-seq
DNase-seq
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell2231
pancreatic beta cell1316
pancreatic acinar cell4
pancreatic cell2
tissue
islet of Langerhans196
subcutaneous adipose tissue10
omental fat pad7
spleen7
body of pancreas5
cell line
HepG261
GM128782
in vitro differentiated cells
white fat cell1
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