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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 162ChIP-seq
  • 92total RNA-seq
  • 19single cell RNA-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 2WGBS
  • 1DNase-seq
Assay category
  • 162DNA binding
  • 111Transcription
  • 6DNA methylation
  • 3DNA accessibility
Target of assay
  • 118control
  • 40transcription factor
  • 6RNA binding protein
  • 4histone
  • 4histone modification
  • 2broad histone mark
  • 2narrow histone mark
  • 1recombinant protein
Date released
  • 95November, 2017
  • 76February, 2023
  • 35September, 2020
  • 34August, 2017
  • 15December, 2017
  • 8February, 2018
  • 5January, 2018
  • 5October, 2018
  • 4January, 2019
  • 4September, 2017
  • 3November, 2018
  • 3October, 2017
Available data
  • 269fastq
  • 163bam
  • 62bigWig
  • 34bed narrowPeak
  • 34bigBed narrowPeak
  • 19zippedFastqFolder
  • 16bed broadPeak
  • 16bigBed broadPeak
  • 7tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3tar
Organism
  • 286Homo sapiens
Biosample type
  • 130primary cell
  • 97cell line
  • 37tissue
  • 22in vitro differentiated cells
  • 1stem cell
Organ
  • 109liver
  • 78pancreas
  • 70epithelium
  • 8connective tissue
  • 8embryo
  • 6brain
  • 4blood
  • 4bodily fluid
  • 3adipose tissue
  • 2musculature of body
  • 2vasculature
  • 1blood vessel
  • 1spleen
Project
  • 176AMP
  • 111HPAP
Genome assembly (visualization)
  • 691hg19
  • GRCh38
  • 5hg18
Lab
  • 176AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 8missing controlled_by
Audit category:
  • 3inconsistent control read length
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

287 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
GRO-seq
RRBS
FAIRE-seq
WGBS
DNase-seq
primary cell
pancreatic alpha cell642
exocrine cell39
Langerhans cell19
pancreatic beta cell611
skeletal muscle myoblast211
cell line
HepG293
GM128784
tissue
liver1211
islet of Langerhans51
pancreas31
body of pancreas3
brain3
in vitro differentiated cells
pancreatic endoderm51
adipocyte5
Hepatic endoderm2
definitive endodermal cell11
primitive gut cell11
stem cell
hESC1
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