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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
54
ATAC-seq
20
total RNA-seq
11
snATAC-seq
10
MeRIP-seq
5
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
67
DNA accessibility
61
DNA binding
20
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
51
control
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
36
August, 2017
24
May, 2022
19
February, 2023
18
May, 2021
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
8
March, 2020
4
August, 2021
4
July, 2018
4
November, 2019
4
September, 2017
3
March, 2019
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
November, 2018
Available data
68
bam
55
fastq
26
bed narrowPeak
12
bigWig
11
tagAlign
7
bed broadPeak
6
txt
5
tsv
4
bedpe bed3+
4
hic
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
167
Homo sapiens
Biosample type
119
tissue
37
cell line
12
primary cell
1
in vitro differentiated cells
Organ
260
liver
169
pancreas
149
kidney
127
heart
118
connective tissue
93
bone element
88
epithelium
67
adipose tissue
60
brain
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
141
AMP
28
T1D
Genome assembly (visualization)
650
hg19
GRCh38
Lab
Klaus Kaestner, Upenn
103
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
29
inconsistent ontology term
1
audit script error
assembly!
GRCh38
lab.title!
Klaus Kaestner, Upenn
month_released!
October, 2017
BIOSAMPLE
ASSAY
169 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
FAIRE-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans
25
36
18
7
4
3
1
1
pancreas
3
1
4
1
1
1
1
body of pancreas
9
1
endocrine pancreas
2
cell line
EndoC_BH1
2
18
6
1
2
1
Panc1
7
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
in vitro differentiated cells
pancreatic PP cell
1
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