Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
6
Hi-C
5
RRBS
2
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
24
DNA binding
6
3D chromatin structure
5
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
5
control
Date released
26
August, 2017
5
July, 2019
3
March, 2020
2
February, 2020
2
June, 2019
May, 2019
2
May, 2022
1
January, 2018
Available data
15
tagAlign
14
bigWig
13
bed broadPeak
13
bed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
3
tsv
2
bam
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
txt
Organism
41
Homo sapiens
Biosample type
38
tissue
3
primary cell
Organ
310
pancreas
260
liver
228
epithelium
145
kidney
121
heart
114
connective tissue
93
bone element
67
adipose tissue
66
brain
55
eye
41
musculature of body
34
vasculature
32
blood vessel
24
limb
20
lung
15
blood
15
bodily fluid
12
nerve
11
artery
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
67
hg19
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assembly!
GRCh38
lab.title!
Struan F.A. Grant, CHOP
month_released!
December, 2019
May, 2019
BIOSAMPLE
ASSAY
41 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
Download