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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
ChIP-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
1
DNase-seq
1
single cell RNA-seq
1
total RNA-seq
Assay category
174
DNA binding
6
DNA methylation
3
3D chromatin structure
2
Transcription
1
DNA accessibility
Target of assay
103
control
41
transcription factor
30
histone
30
histone modification
17
narrow histone mark
13
broad histone mark
6
RNA binding protein
2
chromatin remodeller
1
recombinant protein
Date released
98
November, 2017
35
August, 2017
32
May, 2020
13
December, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
August, 2021
1
December, 2018
1
February, 2020
1
November, 2018
Available data
150
bam
122
fastq
60
bigWig
55
tagAlign
40
bed narrowPeak
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
3
tar
3
tsv
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
189
Homo sapiens
Biosample type
102
cell line
83
tissue
3
primary cell
1
in vitro differentiated cells
Organ
189
liver
127
heart
113
connective tissue
103
pancreas
92
bone element
82
epithelium
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
33
kidney
26
limb
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
189
AMP
Genome assembly (visualization)
590
hg19
GRCh38
Lab
189
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
189 results
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ChIP-seq
WGBS
Hi-C
pCHi-C
RRBS
DNase-seq
single cell RNA-seq
total RNA-seq
cell line
HepG2
99
1
2
tissue
liver
70
3
1
1
1
1
right lobe of liver
3
1
1
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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