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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
52
single cell RNA-seq
27
snATAC-seq
6
WGBS
3
Hi-C
Assay category
144
Transcription
27
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Date released
May, 2022
76
February, 2023
56
September, 2020
45
February, 2021
3
October, 2022
Available data
159
fastq
19
zippedFastqFolder
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
180
Homo sapiens
Biosample type
180
primary cell
Organ
62
epithelium
62
pancreas
Project
180
HPAP
Genome assembly (visualization)
GRCh38
3
hg19
Lab
1070
AMP-T2D consortium
180
Klaus Kaestner, Upenn
139
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
30
audit script error
assembly!
GRCh38
month_released!
May, 2022
organ_slims!
artery
spleen
BIOSAMPLE
ASSAY
180 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
52
27
pancreatic alpha cell
42
6
1
exocrine cell
39
pancreatic beta cell
11
1
pancreatic acinar cell
1
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