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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
ChIP-seq
30
total RNA-seq
20
ATAC-seq
4
Hi-C
3
pCHi-C
2
STARR-seq
1
RRBS
1
WGBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
162
DNA binding
31
Transcription
20
DNA accessibility
4
3D chromatin structure
2
DNA methylation
1
DNA sequencing
Target of assay
97
control
52
transcription factor
13
histone
13
histone modification
11
narrow histone mark
7
RNA binding protein
2
broad histone mark
2
chromatin remodeller
1
recombinant protein
Date released
98
November, 2017
40
May, 2022
August, 2017
32
August, 2021
32
May, 2020
13
December, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
November, 2018
Available data
143
bam
113
fastq
94
bigWig
74
bed narrowPeak
35
tagAlign
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tsv
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
hdf5
1
vcf
Organism
225
Homo sapiens
Biosample type
133
cell line
88
tissue
3
primary cell
1
in vitro differentiated cells
Organ
275
pancreas
225
liver
217
epithelium
146
kidney
127
heart
93
bone element
69
brain
58
connective tissue
55
eye
45
vasculature
43
blood vessel
26
adipose tissue
26
limb
20
lung
17
musculature of body
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
225
AMP
Genome assembly (visualization)
600
hg19
GRCh38
Lab
154
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
month_released!
August, 2017
December, 2019
BIOSAMPLE
ASSAY
225 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
STARR-seq
RRBS
WGBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
117
9
2
2
2
1
tissue
liver
40
20
20
1
1
1
right lobe of liver
3
1
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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