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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ChIP-seq
21
total RNA-seq
20
ATAC-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
1
DNase-seq
1
single cell RNA-seq
Assay category
173
DNA binding
22
Transcription
21
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Target of assay
102
control
41
transcription factor
30
histone
30
histone modification
17
narrow histone mark
13
broad histone mark
6
RNA binding protein
2
chromatin remodeller
1
recombinant protein
Date released
98
November, 2017
40
May, 2022
35
August, 2017
August, 2021
32
May, 2020
13
December, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
November, 2018
Available data
149
bam
122
fastq
80
bigWig
60
bed narrowPeak
54
tagAlign
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
3
tar
3
tsv
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
228
Homo sapiens
Biosample type
123
tissue
102
cell line
2
primary cell
1
in vitro differentiated cells
Organ
307
pancreas
228
liver
227
epithelium
113
connective tissue
93
bone element
83
kidney
69
brain
66
adipose tissue
55
eye
43
musculature of body
39
vasculature
37
blood vessel
35
heart
26
limb
20
lung
15
blood
15
bodily fluid
12
nerve
11
artery
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
228
AMP
Genome assembly (visualization)
607
hg19
GRCh38
Lab
188
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
month_released!
August, 2021
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
228 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
DNase-seq
single cell RNA-seq
tissue
liver
70
20
20
3
1
1
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
99
1
2
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
in vitro differentiated cells
hepatocyte
1
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