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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
8
snATAC-seq
4
Hi-C
3
total RNA-seq
1
ATAC-seq
Assay category
22
DNA binding
9
DNA accessibility
4
3D chromatin structure
3
Transcription
Target of assay
20
control
2
histone
2
histone modification
2
narrow histone mark
Date released
17
October, 2019
8
January, 2021
4
July, 2019
3
February, 2020
January, 2019
3
November, 2018
2
May, 2019
1
January, 2018
Available data
21
bam
3
fastq
3
tsv
2
bigWig
1
bed narrowPeak
1
bigBed narrowPeak
Organism
38
Homo sapiens
Biosample type
26
tissue
8
primary cell
4
cell line
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
13
artery
12
blood
12
bodily fluid
12
nerve
10
vein
8
embryo
8
skeleton
8
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
30
AMP
8
T1D
Genome assembly (visualization)
136
hg19
GRCh38
Lab
30
AMP-T2D consortium
8
Kyle Gaulton, UCSD
assembly!
GRCh38
month_released!
January, 2019
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
snATAC-seq
Hi-C
total RNA-seq
ATAC-seq
tissue
tibial nerve
11
1
tibial artery
5
1
gastrocnemius medialis
4
1
muscle of leg
2
islet of Langerhans
1
primary cell
peripheral blood mononuclear cell
8
cell line
GM12878
3
1
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