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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
36
ATAC-seq
20
total RNA-seq
4
Hi-C
4
MeRIP-seq
3
snATAC-seq
2
FAIRE-seq
2
RRBS
1
pCHi-C
Assay category
46
DNA binding
41
DNA accessibility
20
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
33
control
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
nucleotide modification
Date released
24
August, 2017
24
May, 2022
18
February, 2023
11
October, 2018
10
October, 2019
January, 2021
6
March, 2020
4
July, 2018
4
November, 2020
4
September, 2017
3
March, 2019
2
August, 2021
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
May, 2021
1
November, 2018
1
November, 2019
Available data
53
bam
43
fastq
26
bed narrowPeak
10
bigWig
10
tagAlign
7
bed broadPeak
6
txt
4
tsv
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
117
Homo sapiens
Biosample type
111
tissue
7
cell line
Organ
303
pancreas
260
liver
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
7
blood
7
bodily fluid
5
gonad
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
98
AMP
20
T1D
Genome assembly (visualization)
452
hg19
GRCh38
Lab
66
AMP-T2D consortium
43
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
audit script error
assembly!
GRCh38
month_released!
January, 2021
organ_slims!
epithelium
ovary
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
MeRIP-seq
snATAC-seq
FAIRE-seq
RRBS
pCHi-C
tissue
islet of Langerhans
25
36
18
3
4
3
1
1
body of pancreas
9
1
pancreas
3
1
1
1
1
1
endocrine pancreas
2
cell line
Panc1
7
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