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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
72
total RNA-seq
47
WGBS
45
ChIP-seq
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
90
DNA accessibility
72
Transcription
49
DNA methylation
45
DNA binding
8
3D chromatin structure
Target of assay
50
control
15
histone
histone modification
9
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
104
May, 2022
56
February, 2023
22
August, 2017
May, 2021
16
September, 2020
11
October, 2018
10
November, 2020
9
October, 2019
8
January, 2021
8
March, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2019
4
September, 2017
3
March, 2019
3
October, 2022
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
November, 2018
Available data
114
fastq
80
zippedFastqFolder
66
bam
20
bed narrowPeak
11
tsv
7
bedpe bed3+
7
hic
6
bigWig
6
txt
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
2
tagAlign
1
bed broadPeak
1
bedpe
Organism
276
Homo sapiens
Biosample type
154
primary cell
104
tissue
20
cell line
Organ
278
pancreas
227
liver
208
epithelium
149
kidney
126
heart
92
bone element
73
connective tissue
53
eye
50
brain
40
vasculature
38
blood vessel
36
adipose tissue
24
limb
23
musculature of body
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
skeleton
7
embryo
5
vein
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
142
HPAP
108
AMP
28
T1D
Genome assembly (visualization)
475
hg19
GRCh38
Lab
142
Klaus Kaestner, Upenn
71
AMP-T2D consortium
50
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
13
inconsistent ontology term
4
audit script error
assembly!
GRCh38
month_released!
May, 2021
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
278 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
FAIRE-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
22
42
31
6
1
pancreatic beta cell
13
11
16
6
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
36
18
11
7
4
3
1
1
pancreas
3
4
1
1
1
1
body of pancreas
1
9
endocrine pancreas
2
cell line
EndoC_BH1
2
2
6
1
2
1
Panc1
6
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