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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
6
single cell RNA-seq
5
Hi-C
4
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
WGBS
1
pCHi-C
Assay category
36
DNA binding
10
Transcription
5
3D chromatin structure
2
DNA accessibility
1
DNA methylation
Target of assay
31
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
26
October, 2019
11
May, 2019
6
August, 2021
4
February, 2020
3
July, 2019
3
March, 2020
2
February, 2021
November, 2017
Available data
38
bam
11
tsv
5
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
hdf5
2
tagAlign
1
bed narrowPeak
1
bigBed narrowPeak
1
tar
Organism
55
Homo sapiens
Biosample type
41
tissue
12
primary cell
2
cell line
Organ
311
pancreas
228
epithelium
162
liver
149
kidney
127
heart
118
connective tissue
93
bone element
67
adipose tissue
55
eye
43
musculature of body
43
vasculature
42
blood vessel
41
brain
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
55
AMP
Genome assembly (visualization)
GRCh38
188
hg19
Lab
55
AMP-T2D consortium
Audit category:
1
audit script error
assembly!
GRCh38
month_released!
November, 2017
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
ATAC-seq
FAIRE-seq
WGBS
pCHi-C
tissue
tibial nerve
11
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
+ See 3 more…
primary cell
endothelial cell of umbilical vein
7
2
1
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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