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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
12
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
38
DNA binding
12
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
25
control
13
histone
13
histone modification
9
narrow histone mark
4
broad histone mark
Date released
28
November, 2017
12
February, 2020
October, 2017
8
October, 2019
6
July, 2019
3
May, 2019
2
March, 2020
1
February, 2023
Available data
28
tagAlign
26
bam
14
tsv
8
bigWig
3
bed bed3+
3
fastq
3
hdf5
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
60
Homo sapiens
Biosample type
53
tissue
7
primary cell
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
67
adipose tissue
60
brain
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
GRCh38
158
hg19
Lab
60
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
GRCh38
month_released!
October, 2017
organ_slims!
nerve
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
cerebellum (Hemisphere)
2
1
+ See 20 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
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