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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ATAC-seq
73
total RNA-seq
47
WGBS
44
ChIP-seq
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
106
DNA accessibility
73
Transcription
49
DNA methylation
44
DNA binding
8
3D chromatin structure
Target of assay
40
control
15
histone
15
histone modification
9
broad histone mark
narrow histone mark
5
nucleotide modification
Date released
104
May, 2022
56
February, 2023
30
August, 2017
18
May, 2021
16
September, 2020
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
8
March, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2019
4
September, 2017
3
March, 2019
3
October, 2022
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
November, 2018
Available data
105
fastq
80
zippedFastqFolder
57
bam
24
bed narrowPeak
11
tsv
10
bigWig
7
bedpe bed3+
7
hic
7
tagAlign
6
txt
5
bed broadPeak
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
292
Homo sapiens
Biosample type
154
primary cell
102
tissue
37
cell line
1
in vitro differentiated cells
Organ
294
pancreas
241
liver
229
epithelium
149
kidney
126
heart
93
bone element
84
connective tissue
59
brain
53
eye
44
vasculature
42
blood vessel
38
adipose tissue
35
musculature of body
24
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
9
vein
8
skeleton
7
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
142
HPAP
124
AMP
28
T1D
Genome assembly (visualization)
558
hg19
GRCh38
Lab
142
Klaus Kaestner, Upenn
86
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
29
inconsistent ontology term
4
audit script error
assembly!
GRCh38
month_released!
October, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
294 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
FAIRE-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
22
42
31
6
1
pancreatic beta cell
13
11
16
6
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
36
18
19
7
4
3
1
1
pancreas
1
2
4
1
1
1
1
body of pancreas
1
1
cell line
EndoC_BH1
18
2
6
1
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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