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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
12
total RNA-seq
8
snATAC-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
46
DNA binding
12
Transcription
11
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
27
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
28
November, 2017
12
February, 2020
9
October, 2017
8
January, 2021
October, 2019
6
July, 2019
3
January, 2019
3
May, 2019
3
November, 2018
2
March, 2020
1
February, 2023
1
January, 2018
Available data
29
tagAlign
27
bam
14
tsv
12
fastq
9
bigWig
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
76
Homo sapiens
Biosample type
54
tissue
15
primary cell
7
cell line
Organ
301
pancreas
260
liver
218
epithelium
141
kidney
126
heart
114
connective tissue
93
bone element
66
adipose tissue
61
brain
43
musculature of body
34
eye
31
vasculature
29
blood vessel
20
lung
15
blood
15
bodily fluid
9
limb
9
spleen
8
artery
8
embryo
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
68
AMP
8
T1D
Genome assembly (visualization)
GRCh38
141
hg19
Lab
68
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
GRCh38
month_released!
October, 2019
BIOSAMPLE
ASSAY
76 results
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ChIP-seq
total RNA-seq
snATAC-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 14 more…
primary cell
peripheral blood mononuclear cell
8
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
cell line
GM12878
6
1
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