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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
40
ChIP-seq
16
total RNA-seq
5
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
FAIRE-seq
Assay category
40
DNA binding
16
Transcription
6
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
21
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
84
February, 2021
28
November, 2017
12
February, 2020
9
February, 2023
9
October, 2017
October, 2019
6
July, 2019
3
May, 2019
2
March, 2020
1
May, 2021
Available data
88
txt
29
tagAlign
21
bam
14
tsv
8
bigWig
6
fastq
5
bed bed3
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed narrowPeak
Organism
154
Homo sapiens
Biosample type
146
tissue
8
primary cell
Organ
301
pancreas
260
liver
218
epithelium
141
kidney
126
heart
114
connective tissue
93
bone element
66
adipose tissue
61
brain
43
musculature of body
34
eye
31
vasculature
29
blood vessel
20
lung
15
blood
15
bodily fluid
9
limb
9
spleen
8
artery
8
embryo
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
153
AMP
1
T1D
Genome assembly (visualization)
GRCh38
156
hg19
Lab
153
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
GRCh38
month_released!
October, 2019
BIOSAMPLE
ASSAY
154 results
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RNA microarray
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
RRBS
FAIRE-seq
tissue
bone element
84
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
+ See 19 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
megakaryocyte
1
See all biosamples
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