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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
28
ATAC-seq
17
total RNA-seq
3
Hi-C
3
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
41
DNA binding
29
DNA accessibility
17
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
22
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
32
February, 2023
October, 2019
28
November, 2017
13
February, 2020
9
October, 2017
7
July, 2019
3
May, 2019
2
March, 2020
1
June, 2019
Available data
29
bed narrowPeak
29
tagAlign
22
bam
19
tsv
8
bigWig
6
fastq
3
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
95
Homo sapiens
Biosample type
86
tissue
9
primary cell
Organ
301
pancreas
260
liver
218
epithelium
141
kidney
126
heart
114
connective tissue
93
bone element
66
adipose tissue
61
brain
43
musculature of body
34
eye
31
vasculature
29
blood vessel
20
lung
15
blood
15
bodily fluid
9
limb
9
spleen
8
artery
8
embryo
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
95
AMP
Genome assembly (visualization)
GRCh38
120
hg19
Lab
95
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
GRCh38
month_released!
October, 2019
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
retina
15
3
pigmented layer of retina
12
2
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
+ See 16 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
retinal pigment epithelial cell
1
1
brain pericyte
1
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